Differences

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--- other:inspect3d:documentation:pages:pca_graphs [2024/12/20 15:22] – wikisysop
+++ other:inspect3d:documentation:pages:pca_graphs [2026/04/13 20:33] (current) – ↷ Links adapted because of a move operation 47.82.15.77
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 ====== PCA Graphs ======
-Inspect3D has a window with six displays for exploring the results of [[Sift:Principal_Component_Analysis:Principal_Component_Analysis|Principal Component Analysis]] (PCA). The six displays can be navigated between using the tabs at the bottom of the PCA Graph window. Each display can be dragged to reorder or popped-out into its own standalone window by clicking on the double window icon at the top right of the PCA Graph window. Many aspects of each display are customizable, with the user able to specify line styles, colours, and axis labels among other display features.
+Inspect3D has a window with six displays for exploring the results of [[sift:principal_component_analysis|Principal Component Analysis]] (PCA). The six displays can be navigated between using the tabs at the bottom of the PCA Graph window. Each display can be dragged to reorder or popped-out into its own standalone window by clicking on the double window icon at the top right of the PCA Graph window. Many aspects of each display are customizable, with the user able to specify line styles, colours, and axis labels among other display features.
 Note that these windows will only be populated after PCA is run on the loaded data through the {{:I3D_PCAOptions2.png?20}} **[[Other:Inspect3D:Documentation:Dialogs:ToolBar#PCA_Options|PCA]]** drop down menu. For a detailed explanation on how to run PCA and a basic explanation of the interpretation see the [[Other:Inspect3D:Tutorials:Perform_Principal_Component_Analysis|PCA tutorial]].
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 The curves in the Extreme Plot display show the shape and magnitudes of the selected PC. Within the Extreme Plot display, users can select among many different plot types.
-//Mean +/- 1 SD Reconstruction:// Shows the mean signal, as well as the reconstructed waveforms at +/- 1 standard deviation for that PC. The reconstructed wave forms are computed by multiplying the Loading Vector by the mean score for that PC.
+  * **//Mean +/- 1 SD Reconstruction://** Shows the mean signal, as well as the reconstructed waveforms at +/- 1 standard deviation for that PC. The reconstructed wave forms are computed by multiplying the Loading Vector by the mean score for that PC.
-//Mean +/- 5th and 95th percentile:// Shows the mean signals, as well as the 5th and 95th percentiles of the reconstructed signal for that PC.
+  * **//Mean +/- 5th and 95th percentile://** Shows the mean signals, as well as the 5th and 95th percentiles of the reconstructed signal for that PC.
-//Mean +/- 5th and 95th percentile raw data:// Shows the mean as well as the 5th and 95th percentiles of the raw data for the PC.
+  * **//Mean +/- 5th and 95th percentile raw data://** Shows the mean as well as the 5th and 95th percentiles of the raw data for the PC.
-//Mean +/- custom percent reconstruction:// Plots the mean as well as reconstructed data for the inputted percentiles.
+  * **//Mean +/- custom percent reconstruction://** Plots the mean as well as reconstructed data for the inputted percentiles.
-//Mean +/- Slider:// This option animates each PC from -2 standard deviations to +2 standard deviations while showing the mean curve. The animation starts when the user clicks Play in the bottom right corner.
+  * **//Mean +/- Slider://** This option animates each PC from -2 standard deviations to +2 standard deviations while showing the mean curve.
+The animation starts when the user clicks Play in the bottom right corner.
 Some of the plot types allow the user to input additional specifications. In these cases, the **Refresh Plot** allows the user to apply their settings to the plot and have it update.
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 The graphs for each of the PC displays can be customized to the user's specifications. Right-clicking on any of the graphs will bring up a context menu that allows a number of options to be set. Not all options are available for all displays.
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   * **//Selected Line Size//**: This option controls the width of the selected line. The options range from 1 to 6.
-  * **Original Line Type** This option controls the type of line used for the original data points. The options are None, Dotted and Line.
+  * **//Original Line Type//**: This option controls the type of line used for the original data points. The options are None, Dotted and Line.
   * **//Reconstruction Line Type//**: This option controls the type of line used when using PCs to reconstruct the data. The options are None, Dotted and Line.